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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12911203_12913230_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12911203 - 12913230
Intron Length:
2028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
AGTCTGTCAATT
Flanking Amino Acid:
KGFRLSSLTKLSLLRGKERT
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
81.1
0.7
0.8
74.5
34.6
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
45.7
-0.2
2.1
64.56
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028977
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023372
12908099 - 12916585
8487