Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12913361_12913493_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12913361 - 12913493

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

ATATTATTAGCA

Flanking Amino Acid:

ELTEFEAVPDASMKGLSAEV

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

75.9

0.64

66.1

40.5

Major PPT

91.2

0.93

0.6

84.1

30.8

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

54.1

0.12

1.8

67.86

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023372

12908099 - 12916585

8487