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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12915435_12916342_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12915435 - 12916342
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
TATTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATT
Flanking Amino Acid:
QELQFCKELKDLIQKYEEDL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.3
34.7
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
63.1
0.49
1.8
84.66
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028977
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023372
12908099 - 12916585
8487