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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12940695_12943492_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12940695 - 12943492
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTTGTTAATTA
Flanking Amino Acid:
IKVYQSQTIQVNLMLNGKPV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.5
0.78
0.6
81.4
23.6
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
44.3
-0.4
2.2
57.84
43.1

Associated Gene:

Gene:
CBLN4
Ensembl Gene ID:
ENSAPLG00000004863
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005006
12940432 - 12943690
3259