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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12968040_12977031_F

Intron Information:

Intron Rank:
140092
Intron Class:
major
Intron Phase:
Intron Coordinates:
12968040 - 12977031
Intron Length:
8992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
55
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025332
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017378
12967966 - 12978123
10158