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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13020360_13024337_R

Intron Information:

Intron Rank:
150033
Intron Class:
major
Intron Phase:
Intron Coordinates:
13020360 - 13024337
Intron Length:
3978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73
0.52
0.9
69.7
34.5
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
50
0.08
1.9
69
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028270
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038439
13019436 - 13024481
5046