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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13032442_13033225_R

Intron Information:

Intron Rank:
136268
Intron Class:
major
Intron Phase:
Intron Coordinates:
13032442 - 13033225
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
ATTGTGTTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
82.8
0.74
0.8
80.8
36.5
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
49.7
-0
2.2
66.98
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020732
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037780
12976880 - 13034890
58011