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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13033298_13034326_R

Intron Information:

Intron Rank:
136269
Intron Class:
major
Intron Phase:
Intron Coordinates:
13033298 - 13034326
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AAATCCAAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.8
0.87
0.6
83.5
24.9
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
48.9
-0.1
1.9
60.08
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020732
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037780
12976880 - 13034890
58011