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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13048508_13053085_R

Intron Information:

Intron Rank:
154095
Intron Class:
major
Intron Phase:
Intron Coordinates:
13048508 - 13053085
Intron Length:
4578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTTTCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
88.1
0.86
0.7
82.8
25.8
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
68.6
0.66
1.6
85.16
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030403
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033394
13048180 - 13053332
5153