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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13067530_13111638_R

Intron Information:

Intron Rank:
136198
Intron Class:
major
Intron Phase:
Intron Coordinates:
13067530 - 13111638
Intron Length:
44109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.5
0.69
0.8
80.3
31.7
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020715
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018789
13067367 - 13152878
85512
ENSAPLT00000045136
13067362 - 13151806
84445
ENSAPLT00000025960
13067367 - 13152878
85512