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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13111715_13145164_R

Intron Information:

Intron Rank:
136199
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13111715 - 13145164
Intron Length:
33450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CATCTATTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAAAGTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.2
0.43
1.1
72
36.9
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
55.2
0.24
1.8
70.58
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020715
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045136
13067362 - 13151806
84445
ENSAPLT00000025960
13067367 - 13152878
85512
ENSAPLT00000018789
13067367 - 13152878
85512