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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13143264_13145164_R

Intron Information:

Intron Rank:
136205
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13143264 - 13145164
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTGCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
AAGCTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.8
0.74
0.9
73.9
40.7
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
41.9
-0.5
1.7
53.03
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020715
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028399
13142644 - 13152326
9683