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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13145267_13151854_R

Intron Information:

Intron Rank:
136200
Intron Class:
major
Intron Phase:
Intron Coordinates:
13145267 - 13151854
Intron Length:
6588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020715
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018789
13067367 - 13152878
85512
ENSAPLT00000028399
13142644 - 13152326
9683
ENSAPLT00000025960
13067367 - 13152878
85512