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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13152226_13152756_R

Intron Information:

Intron Rank:
136204
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
13152226 - 13152756
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCAACCTGAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTCTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
47.8
-0.1
1.6
54.9
34
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020715
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025960
13067367 - 13152878
85512