Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13173096_13177540_R

Intron Information:

Intron Rank:

131472

Intron Class:

major

Intron Phase:

Intron Coordinates:

13173096 - 13177540

Intron Length:

4445

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAGGTTTT

5'SS Class:

major

3'SS Sequence:

CATATGATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGTGCATTATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

81.6

33.2

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

71.4

0.48

66.4

43.6

Minor 5ss

46.5

-0.4

3.1

66.5

Minor BPS

52.7

0.06

68.41

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041279

13172909 - 13206235

33327