About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13177639_13205917_R

Intron Information:

Intron Rank:
131473
Intron Class:
major
Intron Phase:
Intron Coordinates:
13177639 - 13205917
Intron Length:
28279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCATTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.8
83.5
31.6
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
56.7
0.29
2
79.73
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017942
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046757
13176920 - 13206235
29316
ENSAPLT00000041279
13172909 - 13206235
33327