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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1318487_1327353_R

Intron Information:

Intron Rank:
152880
Intron Class:
major
Intron Phase:
Intron Coordinates:
1318487 - 1327353
Intron Length:
8867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.3
0.77
0.8
79.5
32.2
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
48.7
-0
1.8
71.21
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029812
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041328
1318278 - 1347275
28998