Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13242723_13243423_R

Intron Information:

Intron Rank:

137900

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13242723 - 13243423

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAATGTGA

5'SS Class:

weak_major

3'SS Sequence:

ATTGCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TTTCATATAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.7

0.18

1.2

52.8

40.7

Major BPS

87.6

0.93

0.9

89.3

Major PPT

81.5

0.71

0.8

77.9

35.9

Minor 5ss

39.1

-1.2

3.3

56.4

47.8

Minor BPS

49.3

-0

1.9

68.52

36.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021700

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025449

13242686 - 13251492

8807