About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13250910_13251060_R

Intron Information:

Intron Rank:
137903
Intron Class:
major
Intron Phase:
Intron Coordinates:
13250910 - 13251060
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTCTT
5'SS Class:
major
3'SS Sequence:
TCATCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTCTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
66.7
44.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.4
0.66
0.8
73.5
31.2
Minor 5ss
35.2
-1.7
3.2
50.8
45.5
Minor BPS
59.3
0.37
1.9
80.84
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021700
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041579
13220140 - 13251492
31353
ENSAPLT00000030409
13222555 - 13251492
28938
ENSAPLT00000028343
13243424 - 13251492
8069
ENSAPLT00000025449
13242686 - 13251492
8807