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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13269932_13272285_R

Intron Information:

Intron Rank:
153967
Intron Class:
major
Intron Phase:
Intron Coordinates:
13269932 - 13272285
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCAAG
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
64.9
42.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.7
85.4
28.1
Minor 5ss
38.8
-1.3
2.8
47.8
47.9
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030320
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021684
13269760 - 13273246
3487