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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1327396_1331585_R

Intron Information:

Intron Rank:
152881
Intron Class:
major
Intron Phase:
Intron Coordinates:
1327396 - 1331585
Intron Length:
4190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
ATATGCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
84.2
0.77
0.8
77.7
36.7
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
59.1
0.36
2.1
79.18
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029812
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041328
1318278 - 1347275
28998