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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13275312_13276929_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13275312 - 13276929
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTGGACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTTTGCATCT
Flanking Amino Acid:
HSTGQLYGLQDVSSPVKLHR
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
50.1
0
1.2
49.8
47.1
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
46.4
-0.2
2.3
75.13
42.3

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005041
13275244 - 13380012
104769
ENSAPLT00000039442
13274647 - 13318274
43628
ENSAPLT00000036091
13275244 - 13297106
21863
ENSAPLT00000033886
13275244 - 13306777
31534
ENSAPLT00000030454
13275244 - 13320197
44954
ENSAPLT00000047300
13274647 - 13300558
25912