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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13276681_13276929_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13276681 - 13276929
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGACCT
Flanking Amino Acid:
HSTGQLYGLQDNQGDITGTG
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.7
84.1
30.1
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
49.9
0.08
2
76.24
40

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043297
13276437 - 13317424
40988
ENSAPLT00000039915
13276437 - 13317424
40988