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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13277051_13277279_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13277051 - 13277279
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTCTCCTTCACA
Flanking Amino Acid:
VLAQDQGSTKLQMKMSERAV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
79.4
0.66
0.9
73
37
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043297
13276437 - 13317424
40988
ENSAPLT00000039442
13274647 - 13318274
43628
ENSAPLT00000036091
13275244 - 13297106
21863
ENSAPLT00000030454
13275244 - 13320197
44954
ENSAPLT00000047300
13274647 - 13300558
25912