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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13277343_13278511_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13277343 - 13278511
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATTATC
5'SS Class:
major
3'SS Sequence:
ATTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
ACTTTCCTATCT
Flanking Amino Acid:
RWWVLPRNKASCLS*
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
78.1
36.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
35.8
-1.6
2.7
46.4
41.7
Minor BPS
53.4
0.19
1.9
74.51
42.4

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042083
13277330 - 13317424
40095