Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13278598_13282721_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13278598 - 13282721

Intron Length:

4124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGGCTG

5'SS Class:

major

3'SS Sequence:

CCTCTGCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

CATGTCTCATTT

Flanking Amino Acid:

RLLQSVKNSMPVLVRVPAYQ

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.1

58.7

45.5

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

78.9

0.65

0.8

72.2

32.4

Minor 5ss

40.6

-1.1

3.3

52.4

45.8

Minor BPS

45.7

-0.2

1.8

60.34

43.9

Associated Gene:

Gene:

DOK5

Ensembl Gene ID:

ENSAPLG00000004868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042083

13277330 - 13317424

40095