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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13285220_13285319_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13285220 - 13285319
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GGCATTTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TATACCTACACA
Flanking Amino Acid:
DTSKTFACESELEADEWCKV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
68.1
0.41
1
61
43.8
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
51.5
0.04
2.1
69.29
42.8

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036091
13275244 - 13297106
21863
ENSAPLT00000043297
13276437 - 13317424
40988
ENSAPLT00000033886
13275244 - 13306777
31534
ENSAPLT00000042083
13277330 - 13317424
40095
ENSAPLT00000030454
13275244 - 13320197
44954
ENSAPLT00000039915
13276437 - 13317424
40988
ENSAPLT00000005041
13275244 - 13380012
104769
ENSAPLT00000039442
13274647 - 13318274
43628
ENSAPLT00000047300
13274647 - 13300558
25912