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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13285435_13296227_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13285435 - 13296227
Intron Length:
10793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
GTCCCCATAAAT
Flanking Amino Acid:
RAAYFRCYHKVTELNNVKNI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.5
0.25
1.8
73.07
42.8

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036091
13275244 - 13297106
21863
ENSAPLT00000043297
13276437 - 13317424
40988
ENSAPLT00000033886
13275244 - 13306777
31534
ENSAPLT00000042083
13277330 - 13317424
40095
ENSAPLT00000030454
13275244 - 13320197
44954
ENSAPLT00000039915
13276437 - 13317424
40988
ENSAPLT00000005041
13275244 - 13380012
104769
ENSAPLT00000039442
13274647 - 13318274
43628
ENSAPLT00000047300
13274647 - 13300558
25912