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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13296336_13317358_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13296336 - 13317358
Intron Length:
21023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
CTAAGTTTACTC
Flanking Amino Acid:
YVRIRSRRLGIYQRCWLVFK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
77.4
0.62
0.9
69.2
41.8
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
43.9
-0.4
2
50.91
40.8

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039442
13274647 - 13318274
43628
ENSAPLT00000043297
13276437 - 13317424
40988
ENSAPLT00000042083
13277330 - 13317424
40095
ENSAPLT00000039915
13276437 - 13317424
40988