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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13296336_13380009_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13296336 - 13380009
Intron Length:
83674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
CTAAGTTTACTC
Flanking Amino Acid:
MIYQRCWLVFK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
77.4
0.62
0.9
69.2
41.8
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
43.9
-0.4
2
50.91
40.8

Associated Gene:

Gene:
DOK5
Ensembl Gene ID:
ENSAPLG00000004868
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005041
13275244 - 13380012
104769