Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1331654_1346952_R

Intron Information:

Intron Rank:

152882

Intron Class:

major

Intron Phase:

Intron Coordinates:

1331654 - 1346952

Intron Length:

15299

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTATATAAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTGTATTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.6

0.49

68.1

41.5

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

66.3

0.59

1.7

84.39

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041328

1318278 - 1347275

28998