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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13381796_13382170_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13381796 - 13382170
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGACAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CCTGTCTTGACA
Flanking Amino Acid:
ELKEEIEVKKKQLQNLEDAC
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.7
41.9
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
60.9
0.25
1
56.2
38.2
Minor 5ss
60.2
0.34
2.5
72.7
44.5
Minor BPS
61.3
0.35
1.4
65.04
42.1

Associated Gene:

Gene:
PFDN4
Ensembl Gene ID:
ENSAPLG00000025483
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045284
13380758 - 13383903
3146