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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13382279_13383050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13382279 - 13383050
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTAATCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAAGTCTTCATT
Flanking Amino Acid:
MAATMKKAAAEDVNVTFE
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.2
0.66
0.9
73
36.9
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
51
0.11
1.8
69.11
42.3

Associated Gene:

Gene:
PFDN4
Ensembl Gene ID:
ENSAPLG00000025483
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045284
13380758 - 13383903
3146