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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13400350_13400620_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13400350 - 13400620
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATTCA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
GAAACCTTACAT
Flanking Amino Acid:
TELQIAGVETTANSLLWALY
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
71.3
34.9
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
40.3
-1.1
2.9
50.9
45.6
Minor BPS
50.3
0.09
1.8
65.56
43.8

Associated Gene:

Gene:
CYP24A1
Ensembl Gene ID:
ENSAPLG00000005136
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005358
13395006 - 13403157
8152