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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13400788_13400944_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13400788 - 13400944
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCACT
Flanking Amino Acid:
YLKACLKESMRLTPSVPFTT
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
79.6
0.67
0.8
74.9
28.7
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
78.7
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
CYP24A1
Ensembl Gene ID:
ENSAPLG00000005136
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005358
13395006 - 13403157
8152