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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13401642_13401751_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13401642 - 13401751
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATACT
5'SS Class:
major
3'SS Sequence:
GGTTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GCTAACTGAAAT
Flanking Amino Acid:
ELQLHLALCWIIRKYQIVAT
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
77.8
36.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
73.7
0.53
1
69.2
46.1
Minor 5ss
37.3
-1.4
2.8
44.1
43.3
Minor BPS
48.3
-0
1.8
65.37
44

Associated Gene:

Gene:
CYP24A1
Ensembl Gene ID:
ENSAPLG00000005136
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005358
13395006 - 13403157
8152