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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13433883_13437065_F

Intron Information:

Intron Rank:
133989
Intron Class:
major
Intron Phase:
Intron Coordinates:
13433883 - 13437065
Intron Length:
3183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAA
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
54.1
0.1
1.4
66
40.9
Major PPT
80.7
0.69
0.8
78.2
29.2
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022056
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034774
13432518 - 13437477
4960