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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13438555_13438668_F

Intron Information:

Intron Rank:
149857
Intron Class:
major
Intron Phase:
Intron Coordinates:
13438555 - 13438668
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TCTGGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.9
73.7
40.5
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
55.1
0.24
1.6
70.11
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030613
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030393
13437548 - 13438835
1288