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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13460891_13468414_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13460891 - 13468414
Intron Length:
7524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AACTAACCCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCTGCATT
Flanking Amino Acid:
MPLSKLFWKKNTSEEAEIVS
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
59.8
0.22
1
48.3
39.5
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
60.4
0.41
1.9
84.15
37

Associated Gene:

Gene:
BCAS1
Ensembl Gene ID:
ENSAPLG00000006033
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006262
13445493 - 13480793
35301