About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13468580_13471416_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13468580 - 13471416
Intron Length:
2837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTGTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
ATTCCTATAATC
Flanking Amino Acid:
KANLRKFFKLSGKGDGGTTR
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
59.8
45.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
82.4
34
Minor 5ss
35.9
-1.6
3.3
43.6
46
Minor BPS
60.7
0.31
1.6
71.28
33.4

Associated Gene:

Gene:
BCAS1
Ensembl Gene ID:
ENSAPLG00000006033
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006262
13445493 - 13480793
35301