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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13474974_13475064_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13474974 - 13475064
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCCTTT
5'SS Class:
weak_major
3'SS Sequence:
GAAACTGCTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTCCCTCTAAAA
Flanking Amino Acid:
LLDSRISPCQTSNSTERPVA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.2
65.8
42.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
56.7
0.15
1
51.6
43.2
Minor 5ss
48.5
-0.1
3.2
72.7
44.5
Minor BPS
52.6
0.08
1.8
66.85
39.3

Associated Gene:

Gene:
BCAS1
Ensembl Gene ID:
ENSAPLG00000006033
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033513
13474923 - 13480793
5871