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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13514123_13527825_F

Intron Information:

Intron Rank:
144698
Intron Class:
major
Intron Phase:
Intron Coordinates:
13514123 - 13527825
Intron Length:
13703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAG
U12 Branch Point Sequence:
CTATCCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
59.9
0.25
1.6
59.6
46.8
Major PPT
82.5
0.73
0.7
80.7
24.5
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
62.9
0.4
1.7
72.2
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027978
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019429
13514050 - 13570337
56288