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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13527905_13568773_F

Intron Information:

Intron Rank:
144699
Intron Class:
major
Intron Phase:
Intron Coordinates:
13527905 - 13568773
Intron Length:
40869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGGTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.4
0.68
0.9
77.2
37
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.9
-0.1
2
65.38
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027978
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019429
13514050 - 13570337
56288