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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1354809_1355714_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1354809 - 1355714
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGGC
5'SS Class:
major
3'SS Sequence:
ATTGTCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTGTCTAAATA
Flanking Amino Acid:
NKLTKKELNRDRAYQWAPTS
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.3
72.7
38.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
70
0.45
0.9
60.7
40.8
Minor 5ss
28.4
-2.5
3
35.8
40.9
Minor BPS
57.2
0.22
1.7
68.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010124
1354741 - 1367382
12642