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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1355876_1356625_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1355876 - 1356625
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAACAA
5'SS Class:
major
3'SS Sequence:
TAAATTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATCTAACT
Flanking Amino Acid:
ADGNFNVLSVRISCLGAVCL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
62.9
37.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
65
0.34
1
64.2
42
Minor 5ss
36.7
-1.5
3.1
47.2
48.2
Minor BPS
67.1
0.62
1.8
89.85
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642
ENSAPLT00000042221
1355141 - 1367382
12242