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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1356770_1358260_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1356770 - 1358260
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATCTT
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATTT
Flanking Amino Acid:
FYFSDENKQKGFTVWALLFV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.1
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
39.1
-1.2
3.2
50.4
45.9
Minor BPS
63.8
0.51
1.8
83.73
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642
ENSAPLT00000042221
1355141 - 1367382
12242