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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13572142_13572262_F

Intron Information:

Intron Rank:
145650
Intron Class:
major
Intron Phase:
Intron Coordinates:
13572142 - 13572262
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTTCTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
83.8
0.76
0.8
79.6
32.5
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
57.3
0.22
1.8
71.52
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028488
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027038
13570970 - 13572603
1634