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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13583479_13583581_F

Intron Information:

Intron Rank:
141732
Intron Class:
major
Intron Phase:
Intron Coordinates:
13583479 - 13583581
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTAC
5'SS Class:
major
3'SS Sequence:
CCATTTGTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTGCCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.4
37.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
67.2
0.39
1.1
70.8
38.8
Minor 5ss
37.3
-1.4
3.3
48.7
47.8
Minor BPS
62
0.45
1.7
78.15
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026318
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023889
13581952 - 13583796
1845