About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1358366_1358451_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1358366 - 1358451
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTAAATTAAAA
Flanking Amino Acid:
IAHISGAYILNLQRLGLILM
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
84.3
0.77
0.7
79.8
32.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48.8
-0
1.9
64.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642
ENSAPLT00000042221
1355141 - 1367382
12242