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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1358523_1358826_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1358523 - 1358826
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTCTCCAATT
Flanking Amino Acid:
SELYFQKIRKEDIPRQLCYI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
73.9
0.54
0.8
71
33.4
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
57.1
0.3
1.8
79.42
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042221
1355141 - 1367382
12242
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642